Rat Genome Database (RGD) PHP API Client

A downloadable PHP package that lets you connect your PHP application to the Rat Genome Database (RGD) API in a private and secure way.

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A robust Rat Genome Database (RGD) API client

Written in PHP

With everything you need

Rat Genome Database (RGD) Logo
  • A convenient fluent interface for interacting with the Rat Genome Database (RGD) API.
  • Supports 100 API operations.
  • Full IDE autocomplete support.
  • Comprehensive documentation.
  • Great customer support.
  • Comprehensive tests, including unit and functional integration tests. All test cases provided.

About Tectalic

Building robust API clients for developers like you

Our experienced team of developers is on a mission to standardize and simplify how developers interact with the Rat Genome Database (RGD) API in their applications.

Instead of writing low-level code yourself to interact with the Rat Genome Database (RGD) API, we think there's a better way.

Purchasing a reliable and robust Rat Genome Database (RGD) API client can save you time and money by letting you focus on delivering value within your application.

Sounds good?

Interested in a Rat Genome Database (RGD) API client?

We're actively building PHP API clients at the moment.

An API client for Rat Genome Database (RGD) isn't available just yet. We are prioritising versions based on development requests, please get in touch to register your interest.

If your requirement is for a Rat Genome Database (RGD) PHP API client, we will respond with an availability date.

Programming Language(s)

A comprehensive Rat Genome Database (RGD) API client

Supporting 100 operations

Get affected genomic models (rat strains with gene alleles) submitted by RGD to AGR by taxonId

Get gene allele records submitted by RGD to AGR by taxonId

Get expression annotations submitted by RGD to AGR by taxonId

Get phenotype annotations submitted by RGD to AGR by taxonId

Get basic variant records submitted by RGD to AGR by taxonId

Get gene records submitted by RGD to AGR by taxonId

Return a list of genes annotated to an ontology term

Returns a list ontology term accession IDs annotated to an rgd object

Returns annotation count for ontology accession ID

Returns annotation count for ontology accession ID and speicies

Returns annotation count for ontology accession ID and object type

Returns a list of annotations for a reference

Returns a list of annotations by RGD ID

Returns a list of annotations by RGD ID and ontology prefix

Returns a list of annotations by RGD ID and ontology term accession ID

Returns a list annotations for an ontology term or a term and it's children

Return a list of genes annotated to the term.Genes are rgdids separated by comma.Species type is an integer value.term is the ontology

Return a chart of ontology terms annotated to the genes.Genes are rgdids separated by comma.Species type is an integer value.Aspect is the Ontology group

Return a list of genes for an affymetrix ID

Return a list of genes for an alias and species

Return a list of gene alleles

Return a list of genes annotated to an ontology term

Return a list of genes annotated to an ontology term

Return a list of genes annotated to an ontology term

Return a list of genes by keyword and species type key

Return a list of all genes with position information for an assembly

Return a list of genes position and map key

Return a list of gene orthologs

Return a list of gene orthologs

Return a list of genes in region

Return a list of all genes for a species in RGD

Return a list of genes position and map key

Get a gene record by RGD ID

Get a gene record by symbol and species type key

Returns a list of gene types avialable in RGD

Translate RGD IDs to Ensembl Gene IDs

Translate an RGD ID to an Ensembl Gene ID

Translate RGD IDs to Ensembl Protein IDs

Translate an RGD ID to an Ensembl Protein ID

Translate RGD IDs to Ensembl Transcript IDs

Translate an RGD ID to an Ensembl Transcript ID

Translate RGD IDs to GTEx IDs

Translate an RGD ID to an GTEx ID

Translate RGD IDs to GenBank Nucleotide IDs

Translate an RGD ID to a GenBank Nucleotide ID

Translate RGD IDs to GenBank Protein IDs

Translate an RGD ID to a GenBank Protein ID

Translate RGD IDs to HGNC IDs

Translate an RGD ID to an HGNC ID

Translate RGD IDs to MGI IDs

Translate an RGD ID to an MGI ID

Translate RGD IDs to NCBI Gene IDs

Translate an RGD ID to an NCBI Gene ID

Translate RGD IDs to UniProt IDs

Translate an RGD ID to a UniProt ID

Return a list assembly maps for a species

Return a Map of species type keys available in RGD

Return a standardUnit for an ontology if it exists

Return a list of chromosomes

Return a list of chromosomes

Return a list of assemblies

Returns child and parent terms for Accession ID

Returns true or false for terms

Returns term for Accession ID

Return a list of pathways based on search term

Return a list of pathways based on category provided

Return a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms. Results will be all records that match all terms submitted. Ontology ids should be submitted as a comma delimited list (ex. RS:0000029,CMO:0000155,CMO:0000139). Species type is an integer ...

Return a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms. Results will be all records that match all terms submitted. Ontology ids should be submitted as a comma delimited list (ex. RS:0000029,CMO:0000155,CMO:0000139). Species type is an integer ...

Returns a list QTL for given position and assembly map

Returns a list QTL for given position and assembly map

Return a QTL for provided RGD ID

Returns a list SSLP for given position and assembly map

Count of active objects by type, for specified species and date

Count of gene types, for specified species and date

Count of objects with given status, for specified species and date

Count of objects with reference sequence(s), by object type, for specified species and date

Count of objects with reference, by object type, for specified species and date

Count of objects with external database ids, by database id, for specified species, object type and date

Count of protein interactions, for specified species and date

Count of strains, by qtl inheritance type, for specified species and date

Count of retired objects by type, for specified species and date

Count of strain types, for specified species and date

Count of withdrawn objects by type, for specified species and date

Count of external database ids, for specied species and date

Count difference of active objects, by type, for specified species and date range

Count difference of gene types, for specified species and date range

Count difference of objects with given status, for specified species and date range

Count difference of objects with reference sequence(s), by object type, for specified species and date range

Count difference of objects with reference, by object type, for specified species and date range

Count difference of objects with external database ids, by database id, for specified species, object type and date range

Count difference of protein interactions, for specified species and date range

Count difference of strains, by qtl inheritance type, for specified species and date range

Count difference of retired objects, by type, for specified species and date range

Count difference of strain types, for specified species and date range

Count difference of withdrawn objects, by type, for specified species and date range

Count difference of external database ids, for specified species and date range

getTermStats

Return all active strains in RGD

Return all active strains by position

Return a strain by RGD ID

Interested in a Rat Genome Database (RGD) API client?

We're actively building PHP API clients at the moment.

An API client for Rat Genome Database (RGD) isn't available just yet. We are prioritising versions based on development requests, please get in touch to register your interest.

If your requirement is for a Rat Genome Database (RGD) PHP API client, we will respond with an availability date.

Programming Language(s)