Monarch Initiative BioLink PHP API Client

A downloadable PHP package that lets you connect your PHP application to the Monarch Initiative BioLink API in a private and secure way.

Imagine...

A robust Monarch Initiative BioLink API client

Written in PHP

With everything you need

Monarch Initiative BioLink Logo
  • A convenient fluent interface for interacting with the Monarch Initiative BioLink API.
  • Supports 161 API operations.
  • Full IDE autocomplete support.
  • Comprehensive documentation.
  • Great customer support.
  • Comprehensive tests, including unit and functional integration tests. All test cases provided.

About Tectalic

Building robust API clients for developers like you

Our experienced team of developers is on a mission to standardize and simplify how developers interact with the Monarch Initiative BioLink API in their applications.

Instead of writing low-level code yourself to interact with the Monarch Initiative BioLink API, we think there's a better way.

Purchasing a reliable and robust Monarch Initiative BioLink API client can save you time and money by letting you focus on delivering value within your application.

Sounds good?

Interested in a Monarch Initiative BioLink API client?

We're actively building PHP API clients at the moment.

An API client for Monarch Initiative BioLink isn't available just yet. We are prioritising versions based on development requests, please get in touch to register your interest.

If your requirement is for a Monarch Initiative BioLink PHP API client, we will respond with an availability date.

Programming Language(s)

A comprehensive Monarch Initiative BioLink API client

Supporting 161 operations

Returns associations connecting two entities

Returns list of matching associations for a given subject category

Returns list of matching associations between a given subject and object category

Returns list of matching associations starting from a given subject (source)

Returns list of matching associations pointing to a given object (target)

Returns list of matching associations of a given type

Returns the association with a given identifier

Returns genes associated with a given anatomy

Returns gene IDs for all genes associated with a given anatomy, filtered by taxon

Returns diseases associated with a case

Returns genotypes associated with a case

Returns models associated with a case

Returns phenotypes associated with a case

Returns variants associated with a case

Returns cases associated with a disease

Returns genes associated with a disease

Returns genotypes associated with a disease

Returns associations to models of the disease

Returns associations to models of the disease constrained by taxon

Returns pathways associated with a disease

Returns phenotypes associated with disease

Returns publications associated with a disease

Returns substances associated with a disease

Returns variants associated with a disease

Returns annotations associated to a function term

Returns genes associated to a GO term

Returns publications associated to a GO term

Returns taxons associated to a GO term

Returns anatomical entities associated with a gene

Returns cases associated with a gene

Returns diseases associated with gene

Returns expression events for a gene

Returns function associations for a gene

Returns genotypes associated with a gene

Returns homologs for a gene

Returns interactions for a gene

Returns models associated with a gene

Return diseases associated with orthologs of a gene

Return phenotypes associated with orthologs for a gene

Returns pathways associated with gene

Returns phenotypes associated with gene

Returns publications associated with a gene

Returns variants associated with a gene

Returns cases associated with a genotype

Returns diseases associated with a genotype

Returns genes associated with a genotype

Returns genotypes-genotype associations

Returns models associated with a genotype

Returns phenotypes associated with a genotype

Returns publications associated with a genotype

Returns genotypes-variant associations

Returns associations to GO terms for a gene

Returns cases associated with a model

Returns diseases associated with a model

Returns genes associated with a model

Returns genotypes associated with a model

Returns phenotypes associated with a model

Returns publications associated with a model

Returns variants associated with a model

Returns diseases associated with a pathway

Returns genes associated with a pathway

Returns phenotypes associated with a pathway

Returns anatomical entities associated with a phenotype

Returns cases associated with a phenotype

Returns diseases associated with a phenotype

Returns gene IDs for all genes associated with a given phenotype, filtered by taxon

Returns genes associated with a phenotype

Returns genotypes associated with a phenotype

Returns pathways associated with a phenotype

Returns publications associated with a phenotype

Returns variants associated with a phenotype

Returns diseases associated with a publication

Returns genes associated with a publication

Returns genotypes associated with a publication

Returns models associated with a publication

Returns phenotypes associated with a publication

Returns variants associated with a publication

Returns associations between an activity and process and the specified substance

Returns associations between given drug and roles

Returns substances associated with a disease

Returns cases associated with a variant

Returns diseases associated with a variant

Returns genes associated with a variant

Returns genotypes associated with a variant

Returns models associated with a variant

Returns phenotypes associated with a variant

Returns publications associated with a variant

Returns basic info on object of any type

Returns associations for an entity regardless of the type

Return basic info on an object for a given type

Returns compact associations for a given input set

Summary statistics for objects associated

TODO Graph object spanning all entities

Returns homology associations for a given input set of genes

Summary statistics for objects associated

For a given gene(s), summarize its annotations over a defined set of slim

For a given gene(s), summarize its annotations over a defined set of slim

For a given gene(s), summarize its annotations over a defined set of slim

Returns list of models

Returns list of matches

Returns list of all instances

Returns list of ALL models

Returns list of all contributors across all models

Returns list of all properties used across all models

Returns list property-values for all models

Returns list of models matching query

Returns a complete model

Returns list of models

Returns evidence graph object for a given association

Returns evidence as a association_results object given an association

Returns list of matches

Returns edges emanating from a given node

Returns a graph node

TODO maps a list of identifiers from a source to a target

Returns list of prefixes

Returns contracted URI

Returns expanded URI

Returns list of matches

Returns list of matches

Bulk download of case associations

Bulk download of disease associations

Bulk download of gene associations

Bulk download of orthologs

Bulk download of paralogs

Get metadata for all datasets from SciGraph

Annotate a given text using SciGraph annotator

Annotate a given text using SciGraph annotator

Annotate a given content using SciGraph annotator and get all entities from content

Annotate a given content using SciGraph annotator and get all entities from content

Returns information content (IC) for a set of relevant ontology classes

Fetches a map from CURIEs/IDs to labels

Extract a subgraph from an ontology

Extract a subgraph from an ontology

Returns the ancestor ontology terms shared by two ontology terms

Returns meta data of an ontology subset (slim)

Returns meta data of an ontology term

Returns graph of an ontology term

Extract a subgraph from an ontology term

Returns subsets (slims) associated to an ontology term

Placeholder - use OWLery for now

Placeholder - use direct SPARQL endpoint for now

Get pairwise similarity

All relations used plus count of associations

All relations used plus count of associations

Relation usage count for all subj x obj category combinations

Relation usage count for all subj x obj category combinations, showing label

Returns list of matching concepts or entities using lexical search

Returns list of matching concepts or entities using lexical search

Returns list of matching concepts or entities using lexical search

Compare a reference profile vs one profiles

Compare a reference profile vs one or more profiles

Get annotation score

Get annotation score

Search for phenotypically similar diseases or model genes

Returns list of variant sets

Creates a new variant set

Returns list of matches

Returns list of variant sets from a specified time period

Returns a variant set

Updates a variant set

Deletes variant set

Interested in a Monarch Initiative BioLink API client?

We're actively building PHP API clients at the moment.

An API client for Monarch Initiative BioLink isn't available just yet. We are prioritising versions based on development requests, please get in touch to register your interest.

If your requirement is for a Monarch Initiative BioLink PHP API client, we will respond with an availability date.

Programming Language(s)